NEWS: mMass reached its end. There will be no further development and support.
Since most time in data interpretation is spent manipulating spectra (e.i. moving, scaling, zooming etc.), attention was paid to make these functions as easy and user friendly as possible. Everything is accessible by mouse, keyboard or combination of both. In addition, position bars always indicate your current position, zoom and relative intensity within the context of shown data.
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If you'd like to compare multiple mass spectra from different samples, simple overlay is not the right way to do it. Gel-like view provides much clearer representation of large data sets, where all the differences can be seen immediately.
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Since every instrument provides different intensity range for acquired mass spectra, it is very difficult to compare multiple spectra originating from different machines. Normalized view provides an easy way to overcome this problem without a need for prior data processing.
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Sometimes simple overlay is not the right way of data comparison even for two mass spectra. By flipping one of the spectra vertically, all the differences become much clearer and more easily detectable.
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With the Spectrum Ruler tool you no longer need a calculator just to measure exact difference between two peaks or to calculate peak charge from related isotopes. All you need to do is drag a mouse and see all the information down in mMass's bottom bar. In addition, peak area can be calculated in the same way.
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Even if mMass provides a tool for automatic peak picking, manual peak picking might be essential in some cases. Several tools are therefore available to label peak, label point or to calculate centroid or monoisotopic peak from isotopes cluster.
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